The city opening a massive new migrant shelter in the Bronx, the Daily News has learned — a sign that city is still wrestling with the tens of thousands of migrants in the city’s care despite dozens of shelter closures.

The controversial shelter at 47 Hall St. in Brooklyn’s Clinton Hill neighborhood, which housed roughly 3,350 single male migrants at the peak of the crisis, is among the handful of taxpayer-funded sites expected to close in June, according to city officials.

The Adams administration will shutter 13 more emergency migrant shelters, including a massive Brooklyn facility where 3,500 migrants currently reside, as the number of asylum seekers traveling to the city continues to recede,